Evolution on a Rugged Landscape:Pinning and Aging

Population dynamics on a rugged landscape is studied analytically and numerically within a simple discrete model for evolution of N individuals in one-dimensional fitness space. We reduce the set of master equations to a single Fokker-Plank equation which allows us to describe the dynamics of the population in terms of thermo-activated Langevin diffusion of a single particle in a specific random potential. We found that the randomness in the mutation rate leads to pinning of the population and on average to a logarithmic slowdown of the evolution, resembling aging phenomenon in spin glass systems. In contrast, the randomness in the replication rate turns out to be irrelevant for evolution in the long-time limit as it is smoothed out by increasing ``evolution temperature''. The analytic results are in a good agreement with numerical simulations.Comment: 4 pages, 3 figures, submitted to Phys. Rev. Let

Controlled Dynamics of Interfaces in a Vibrated Granular Layer

We present experimental study of a topological excitation, {\it interface}, in a vertically vibrated layer of granular material. We show that these interfaces, separating regions of granular material oscillation with opposite phases, can be shifted and controlled by a very small amount of an additional subharmonic signal, mixed with the harmonic driving signal. The speed and the direction of interface motion depends sensitively on the phase and the amplitude of the subharmonic driving.Comment: 4 pages, 6 figures, RevTe

Nonequilibrium steady states in a vibrated-rod monolayer: tetratic, nematic and smectic correlations

We study experimentally the nonequilibrium phase behaviour of a horizontal monolayer of macroscopic rods. The motion of the rods in two dimensions is driven by vibrations in the vertical direction. Aside from the control variables of packing fraction and aspect ratio that are typically explored in molecular liquid crystalline systems, due to the macroscopic size of the particles we are also able to investigate the effect of the precise shape of the particle on the steady states of this driven system. We find that the shape plays an important role in determining the nature of the orientational ordering at high packing fraction. Cylindrical particles show substantial tetratic correlations over a range of aspect ratios where spherocylinders have previously been shown by Bates et al (JCP 112, 10034 (2000)) to undergo transitions between isotropic and nematic phases. Particles that are thinner at the ends (rolling pins or bails) show nematic ordering over the same range of aspect ratios, with a well-established nematic phase at large aspect ratio and a defect-ridden nematic state with large-scale swirling motion at small aspect ratios. Finally, long-grain, basmati rice, whose geometry is intermediate between the two shapes above, shows phases with strong indications of smectic order.Comment: 18 pages and 13 eps figures, references adde

Dynamics of axial separation in long rotating drums

We propose a continuum description for the axial separation of granular materials in a long rotating drum. The model, operating with two local variables, concentration difference and the dynamic angle of repose, describes both initial transient traveling wave dynamics and long-term segregation of the binary mixture. Segregation proceeds through ultra-slow logarithmic coarsening.Comment: 4 pages, 3 Postscript figures; submitted to PR

Continuum theory of partially fluidized granular flows

A continuum theory of partially fluidized granular flows is developed. The theory is based on a combination of the equations for the flow velocity and shear stresses coupled with the order parameter equation which describes the transition between flowing and static components of the granular system. We apply this theory to several important granular problems: avalanche flow in deep and shallow inclined layers, rotating drums and shear granular flows between two plates. We carry out quantitative comparisons between the theory and experiment.Comment: 28 pages, 23 figures, submitted to Phys. Rev.

Partially fluidized shear granular flows: Continuum theory and MD simulations

The continuum theory of partially fluidized shear granular flows is tested and calibrated using two dimensional soft particle molecular dynamics simulations. The theory is based on the relaxational dynamics of the order parameter that describes the transition between static and flowing regimes of granular material. We define the order parameter as a fraction of static contacts among all contacts between particles. We also propose and verify by direct simulations the constitutive relation based on the splitting of the shear stress tensor into a``fluid part'' proportional to the strain rate tensor, and a remaining ``solid part''. The ratio of these two parts is a function of the order parameter. The rheology of the fluid component agrees well with the kinetic theory of granular fluids even in the dense regime. Based on the hysteretic bifurcation diagram for a thin shear granular layer obtained in simulations, we construct the ``free energy'' for the order parameter. The theory calibrated using numerical experiments with the thin granular layer is applied to the surface-driven stationary two dimensional granular flows in a thick granular layer under gravity.Comment: 20 pages, 19 figures, submitted to Phys. Rev.

Competing Patterns of Signaling Activity in Dictyostelium discoideum

Quantitative experiments are described on spatio-temporal patterns of coherent chemical signaling activity in populations of {\it Dictyostelium discoideum} amoebae. We observe competition between spontaneously firing centers and rotating spiral waves that depends strongly on the overall cell density. At low densities, no complete spirals appear and chemotactic aggregation is driven by periodic concentric waves, whereas at high densities the firing centers seen at early times nucleate and are apparently entrained by spiral waves whose cores ultimately serve as aggregation centers. Possible mechanisms for these observations are discussed.Comment: 10 pages, RevTeX, 4 ps figures, accepted in PR